Package index

Model fitting

mjoint()

Fit a joint model to time-to-event data and multivariate longitudinal data

mjoint.object

Fitted mjoint object

joineRML-package

joineRML: Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes

joineRML

joineRML

Model summaries and inference

summary(<mjoint>)

Summary of an mjoint object

fixef(<mjoint>)

Extract fixed effects estimates from an mjoint object

ranef(<mjoint>)

Extract random effects estimates from an mjoint object

vcov(<mjoint>)

Extract an approximate variance-covariance matrix of estimated parameters from an mjoint object

confint(<mjoint>)

Confidence intervals for model parameters of an mjoint object

getVarCov(<mjoint>)

Extract variance-covariance matrix of random effects from an mjoint object

sigma(<mjoint>)

Extract residual standard deviation(s) from an mjoint object

logLik(<mjoint>)

Extract log-likelihood from an mjoint object

formula(<mjoint>)

Extract model formulae from an mjoint object

Prediction and dynamic prediction

fitted(<mjoint>)

Extract mjoint fitted values

residuals(<mjoint>)

Extract mjoint residuals

dynSurv()

Dynamic predictions for the time-to-event data sub-model

dynLong()

Dynamic predictions for the longitudinal data sub-model

baseHaz()

The baseline hazard estimate of an mjoint object

Plotting and diagnostics

plot(<mjoint>)

Plot diagnostics from an mjoint object

plot(<ranef.mjoint>)

Plot a ranef.mjoint object

plot(<dynSurv>)

Plot a dynSurv object

plot(<dynLong>)

Plot a dynLong object

plotConvergence()

Plot convergence time series for parameter vectors from an mjoint object

Simulation, resampling, and uncertainty

simData()

Simulate data from a joint model

sampleData()

Sample from an mjoint object

bootSE()

Standard errors via bootstrap for an mjoint object

Tidiers

tidy(<mjoint>) augment(<mjoint>) glance(<mjoint>)

Tidying methods for joint models for time-to-event data and multivariate longitudinal data

reexports augment glance tidy

Objects exported from other packages

Data

heart.valve

Aortic valve replacement surgery data

epileptic.qol

Quality of life data following epilepsy drug treatment

pbc2

Mayo Clinic primary biliary cirrhosis data

renal

Renal transplantation data